PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20074.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 724aa    MW: 82980.7 Da    PI: 7.017
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20074.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.52.4e-1479174191
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 ++Y+++++ +GFs+rk + ++     + it+r f Cs++g++   +++     + ++++   tr +Cka ++   ++ g wev +   eHnH+l+p
  Dca20074.1  79 EMYQKHSQVMGFSTRKGTIRRVnGVGTPITQRYFLCSCQGEHGGGSRRglkgVSVQQKNALITRSECKAWIRTLVNEAGLWEVVDHIIEHNHPLTP 174
                 58****************999845567799***********99988888888788889999********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-1279174IPR004330FAR1 DNA binding domain
PfamPF105513.5E-32295390IPR018289MULE transposase domain
PROSITE profilePS509669.705545581IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MSNNKTKKPC TITFETENVI DLEKDASEED VFEGGGEDNP VDKEHDEGGV DDNLSDMKDF  60
DFSRSLVGVK AKSSEDLYEM YQKHSQVMGF STRKGTIRRV NGVGTPITQR YFLCSCQGEH  120
GGGSRRGLKG VSVQQKNALI TRSECKAWIR TLVNEAGLWE VVDHIIEHNH PLTPPQWQHH  180
HRSERRISEA EGEVIKAMTE TLVAPSVQFR VASAVAGGDT LVGHTKRDHI NFVNRLKMRS  240
IEGGDAATLI NLMNSRQAED PGFFFRVQFD EDGRLFNLFW HDSMMKEDYL LYHDVVIFDT  300
TYRTNRYNLI CGAFVGINNH WSNVMFGCSF LSDEKAESFE WLFNVFNESM GEDVRPVSIF  360
TDQDQAMSNA IEKVFPASRH RLCQWHIQQN AISHFGSLKH DRAFQKRFNK CLNGCYNETE  420
FEETWSNMIK DYNLHDHSWF KRLYNIKMKW CTALNNEYFS AGILSSQRSE STNHAMGFQA  480
TKTTSVTEFF LDLLQHASEV YTLELFRVFE KEFTLAMGTR TSILSCSDSI FVYRVDPPTV  540
EDCSHHVTFD CGNKLVDCTC RKFQVMGMLC YHIIRVLHIH SIPQIPPMYI LARWSKSSKT  600
GVWNRLLPSD TRTTDANNAI NWRRSMLINL NNLLTKCQDV PDARTALQKI YGKANDEMQS  660
ILVTHNLDND QSAGQVQDST ILDPVRCTTK GRKKSNVSKR KKARKSIEDT PNNVEMYTPV  720
PRLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1689701KGRKKSNVSKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665808.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-87FAR1-related sequence 5